Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.
Identifieur interne : 000458 ( Main/Exploration ); précédent : 000457; suivant : 000459Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.
Auteurs : Elena Fernandez-Fueyo [Espagne] ; Francisco J. Ruiz-Due As ; Patricia Ferreira ; Dimitrios Floudas ; David S. Hibbett ; Paulo Canessa ; Luis F. Larrondo ; Tim Y. James ; Daniela Seelenfreund ; Sergio Lobos ; Rubén Polanco ; Mario Tello ; Yoichi Honda ; Takahito Watanabe ; Takashi Watanabe ; Jae San Ryu ; Ryu Jae San ; Christian P. Kubicek ; Monika Schmoll ; Jill Gaskell ; Kenneth E. Hammel ; Franz J. St John ; Amber Vanden Wymelenberg ; Grzegorz Sabat ; Sandra Splinter Bondurant ; Khajamohiddin Syed ; Jagjit S. Yadav ; Harshavardhan Doddapaneni ; Venkataramanan Subramanian ; José L. Lavín ; José A. Oguiza ; Gumer Perez ; Antonio G. Pisabarro ; Lucia Ramirez ; Francisco Santoyo ; Emma Master ; Pedro M. Coutinho ; Bernard Henrissat ; Vincent Lombard ; Jon Karl Magnuson ; Ursula Kües ; Chiaki Hori ; Kiyohiko Igarashi ; Masahiro Samejima ; Benjamin W. Held ; Kerrie W. Barry ; Kurt M. Labutti ; Alla Lapidus ; Erika A. Lindquist ; Susan M. Lucas ; Robert Riley ; Asaf A. Salamov ; Dirk Hoffmeister ; Daniel Schwenk ; Yitzhak Hadar ; Oded Yarden ; Ronald P. De Vries ; Ad Wiebenga ; Jan Stenlid ; Daniel Eastwood ; Igor V. Grigoriev ; Randy M. Berka ; Robert A. Blanchette ; Phil Kersten ; Angel T. Martinez ; Rafael Vicuna ; Dan CullenSource :
- Proceedings of the National Academy of Sciences of the United States of America [ 1091-6490 ] ; 2012.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Basidiomycota.
- métabolisme : Basidiomycota, Lignine.
- Données de séquences moléculaires, Génomique, Hydrolyse, Oxydoréduction, Phylogenèse, Spécificité d'espèce.
English descriptors
- KwdEn :
- MESH :
- chemical , metabolism : Lignin.
- classification : Basidiomycota.
- genetics : Basidiomycota.
- Genomics, Hydrolysis, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, Species Specificity.
Abstract
Efficient lignin depolymerization is unique to the wood decay basidiomycetes, collectively referred to as white rot fungi. Phanerochaete chrysosporium simultaneously degrades lignin and cellulose, whereas the closely related species, Ceriporiopsis subvermispora, also depolymerizes lignin but may do so with relatively little cellulose degradation. To investigate the basis for selective ligninolysis, we conducted comparative genome analysis of C. subvermispora and P. chrysosporium. Genes encoding manganese peroxidase numbered 13 and five in C. subvermispora and P. chrysosporium, respectively. In addition, the C. subvermispora genome contains at least seven genes predicted to encode laccases, whereas the P. chrysosporium genome contains none. We also observed expansion of the number of C. subvermispora desaturase-encoding genes putatively involved in lipid metabolism. Microarray-based transcriptome analysis showed substantial up-regulation of several desaturase and MnP genes in wood-containing medium. MS identified MnP proteins in C. subvermispora culture filtrates, but none in P. chrysosporium cultures. These results support the importance of MnP and a lignin degradation mechanism whereby cleavage of the dominant nonphenolic structures is mediated by lipid peroxidation products. Two C. subvermispora genes were predicted to encode peroxidases structurally similar to P. chrysosporium lignin peroxidase and, following heterologous expression in Escherichia coli, the enzymes were shown to oxidize high redox potential substrates, but not Mn(2+). Apart from oxidative lignin degradation, we also examined cellulolytic and hemicellulolytic systems in both fungi. In summary, the C. subvermispora genetic inventory and expression patterns exhibit increased oxidoreductase potential and diminished cellulolytic capability relative to P. chrysosporium.
DOI: 10.1073/pnas.1119912109
PubMed: 22434909
PubMed Central: PMC3325662
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Salamov</name></author><author><name sortKey="Hoffmeister, Dirk" sort="Hoffmeister, Dirk" uniqKey="Hoffmeister D" first="Dirk" last="Hoffmeister">Dirk Hoffmeister</name></author><author><name sortKey="Schwenk, Daniel" sort="Schwenk, Daniel" uniqKey="Schwenk D" first="Daniel" last="Schwenk">Daniel Schwenk</name></author><author><name sortKey="Hadar, Yitzhak" sort="Hadar, Yitzhak" uniqKey="Hadar Y" first="Yitzhak" last="Hadar">Yitzhak Hadar</name></author><author><name sortKey="Yarden, Oded" sort="Yarden, Oded" uniqKey="Yarden O" first="Oded" last="Yarden">Oded Yarden</name></author><author><name sortKey="De Vries, Ronald P" sort="De Vries, Ronald P" uniqKey="De Vries R" first="Ronald P" last="De Vries">Ronald P. De Vries</name></author><author><name sortKey="Wiebenga, Ad" sort="Wiebenga, Ad" uniqKey="Wiebenga A" first="Ad" last="Wiebenga">Ad Wiebenga</name></author><author><name sortKey="Stenlid, Jan" sort="Stenlid, Jan" uniqKey="Stenlid J" first="Jan" last="Stenlid">Jan Stenlid</name></author><author><name sortKey="Eastwood, Daniel" sort="Eastwood, Daniel" uniqKey="Eastwood D" first="Daniel" last="Eastwood">Daniel Eastwood</name></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name></author><author><name sortKey="Berka, Randy M" sort="Berka, Randy M" uniqKey="Berka R" first="Randy M" last="Berka">Randy M. Berka</name></author><author><name sortKey="Blanchette, Robert A" sort="Blanchette, Robert A" uniqKey="Blanchette R" first="Robert A" last="Blanchette">Robert A. 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Martinez</name></author><author><name sortKey="Vicuna, Rafael" sort="Vicuna, Rafael" uniqKey="Vicuna R" first="Rafael" last="Vicuna">Rafael Vicuna</name></author><author><name sortKey="Cullen, Dan" sort="Cullen, Dan" uniqKey="Cullen D" first="Dan" last="Cullen">Dan Cullen</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2012">2012</date><idno type="RBID">pubmed:22434909</idno><idno type="pmid">22434909</idno><idno type="doi">10.1073/pnas.1119912109</idno><idno type="pmc">PMC3325662</idno><idno type="wicri:Area/Main/Corpus">000440</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000440</idno><idno type="wicri:Area/Main/Curation">000440</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000440</idno><idno type="wicri:Area/Main/Exploration">000440</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.</title><author><name sortKey="Fernandez Fueyo, Elena" sort="Fernandez Fueyo, Elena" uniqKey="Fernandez Fueyo E" first="Elena" last="Fernandez-Fueyo">Elena Fernandez-Fueyo</name><affiliation wicri:level="2"><nlm:affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Cientificas, E-28040 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Cientificas, E-28040 Madrid</wicri:regionArea><placeName><region nuts="2" type="communauté">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Ruiz Due As, Francisco J" sort="Ruiz Due As, Francisco J" uniqKey="Ruiz Due As F" first="Francisco J" last="Ruiz-Due As">Francisco J. Ruiz-Due As</name></author><author><name sortKey="Ferreira, Patricia" sort="Ferreira, Patricia" uniqKey="Ferreira P" first="Patricia" last="Ferreira">Patricia Ferreira</name></author><author><name sortKey="Floudas, Dimitrios" sort="Floudas, Dimitrios" uniqKey="Floudas D" first="Dimitrios" last="Floudas">Dimitrios Floudas</name></author><author><name sortKey="Hibbett, David S" sort="Hibbett, David S" uniqKey="Hibbett D" first="David S" last="Hibbett">David S. Hibbett</name></author><author><name sortKey="Canessa, Paulo" sort="Canessa, Paulo" uniqKey="Canessa P" first="Paulo" last="Canessa">Paulo Canessa</name></author><author><name sortKey="Larrondo, Luis F" sort="Larrondo, Luis F" uniqKey="Larrondo L" first="Luis F" last="Larrondo">Luis F. Larrondo</name></author><author><name sortKey="James, Tim Y" sort="James, Tim Y" uniqKey="James T" first="Tim Y" last="James">Tim Y. James</name></author><author><name sortKey="Seelenfreund, Daniela" sort="Seelenfreund, Daniela" uniqKey="Seelenfreund D" first="Daniela" last="Seelenfreund">Daniela Seelenfreund</name></author><author><name sortKey="Lobos, Sergio" sort="Lobos, Sergio" uniqKey="Lobos S" first="Sergio" last="Lobos">Sergio Lobos</name></author><author><name sortKey="Polanco, Ruben" sort="Polanco, Ruben" uniqKey="Polanco R" first="Rubén" last="Polanco">Rubén Polanco</name></author><author><name sortKey="Tello, Mario" sort="Tello, Mario" uniqKey="Tello M" first="Mario" last="Tello">Mario Tello</name></author><author><name sortKey="Honda, Yoichi" sort="Honda, Yoichi" uniqKey="Honda Y" first="Yoichi" last="Honda">Yoichi Honda</name></author><author><name sortKey="Watanabe, Takahito" sort="Watanabe, Takahito" uniqKey="Watanabe T" first="Takahito" last="Watanabe">Takahito Watanabe</name></author><author><name sortKey="Watanabe, Takashi" sort="Watanabe, Takashi" uniqKey="Watanabe T" first="Takashi" last="Watanabe">Takashi Watanabe</name></author><author><name sortKey="Ryu, Jae San" sort="Ryu, Jae San" uniqKey="Ryu J" first="Jae San" last="Ryu">Jae San Ryu</name></author><author><name sortKey="San, Ryu Jae" sort="San, Ryu Jae" uniqKey="San R" first="Ryu Jae" last="San">Ryu Jae San</name></author><author><name sortKey="Kubicek, Christian P" sort="Kubicek, Christian P" uniqKey="Kubicek C" first="Christian P" last="Kubicek">Christian P. Kubicek</name></author><author><name sortKey="Schmoll, Monika" sort="Schmoll, Monika" uniqKey="Schmoll M" first="Monika" last="Schmoll">Monika Schmoll</name></author><author><name sortKey="Gaskell, Jill" sort="Gaskell, Jill" uniqKey="Gaskell J" first="Jill" last="Gaskell">Jill Gaskell</name></author><author><name sortKey="Hammel, Kenneth E" sort="Hammel, Kenneth E" uniqKey="Hammel K" first="Kenneth E" last="Hammel">Kenneth E. Hammel</name></author><author><name sortKey="St John, Franz J" sort="St John, Franz J" uniqKey="St John F" first="Franz J" last="St John">Franz J. St John</name></author><author><name sortKey="Vanden Wymelenberg, Amber" sort="Vanden Wymelenberg, Amber" uniqKey="Vanden Wymelenberg A" first="Amber" last="Vanden Wymelenberg">Amber Vanden Wymelenberg</name></author><author><name sortKey="Sabat, Grzegorz" sort="Sabat, Grzegorz" uniqKey="Sabat G" first="Grzegorz" last="Sabat">Grzegorz Sabat</name></author><author><name sortKey="Splinter Bondurant, Sandra" sort="Splinter Bondurant, Sandra" uniqKey="Splinter Bondurant S" first="Sandra" last="Splinter Bondurant">Sandra Splinter Bondurant</name></author><author><name sortKey="Syed, Khajamohiddin" sort="Syed, Khajamohiddin" uniqKey="Syed K" first="Khajamohiddin" last="Syed">Khajamohiddin Syed</name></author><author><name sortKey="Yadav, Jagjit S" sort="Yadav, Jagjit S" uniqKey="Yadav J" first="Jagjit S" last="Yadav">Jagjit S. Yadav</name></author><author><name sortKey="Doddapaneni, Harshavardhan" sort="Doddapaneni, Harshavardhan" uniqKey="Doddapaneni H" first="Harshavardhan" last="Doddapaneni">Harshavardhan Doddapaneni</name></author><author><name sortKey="Subramanian, Venkataramanan" sort="Subramanian, Venkataramanan" uniqKey="Subramanian V" first="Venkataramanan" last="Subramanian">Venkataramanan Subramanian</name></author><author><name sortKey="Lavin, Jose L" sort="Lavin, Jose L" uniqKey="Lavin J" first="José L" last="Lavín">José L. Lavín</name></author><author><name sortKey="Oguiza, Jose A" sort="Oguiza, Jose A" uniqKey="Oguiza J" first="José A" last="Oguiza">José A. Oguiza</name></author><author><name sortKey="Perez, Gumer" sort="Perez, Gumer" uniqKey="Perez G" first="Gumer" last="Perez">Gumer Perez</name></author><author><name sortKey="Pisabarro, Antonio G" sort="Pisabarro, Antonio G" uniqKey="Pisabarro A" first="Antonio G" last="Pisabarro">Antonio G. Pisabarro</name></author><author><name sortKey="Ramirez, Lucia" sort="Ramirez, Lucia" uniqKey="Ramirez L" first="Lucia" last="Ramirez">Lucia Ramirez</name></author><author><name sortKey="Santoyo, Francisco" sort="Santoyo, Francisco" uniqKey="Santoyo F" first="Francisco" last="Santoyo">Francisco Santoyo</name></author><author><name sortKey="Master, Emma" sort="Master, Emma" uniqKey="Master E" first="Emma" last="Master">Emma Master</name></author><author><name sortKey="Coutinho, Pedro M" sort="Coutinho, Pedro M" uniqKey="Coutinho P" first="Pedro M" last="Coutinho">Pedro M. Coutinho</name></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name></author><author><name sortKey="Lombard, Vincent" sort="Lombard, Vincent" uniqKey="Lombard V" first="Vincent" last="Lombard">Vincent Lombard</name></author><author><name sortKey="Magnuson, Jon Karl" sort="Magnuson, Jon Karl" uniqKey="Magnuson J" first="Jon Karl" last="Magnuson">Jon Karl Magnuson</name></author><author><name sortKey="Kues, Ursula" sort="Kues, Ursula" uniqKey="Kues U" first="Ursula" last="Kües">Ursula Kües</name></author><author><name sortKey="Hori, Chiaki" sort="Hori, Chiaki" uniqKey="Hori C" first="Chiaki" last="Hori">Chiaki Hori</name></author><author><name sortKey="Igarashi, Kiyohiko" sort="Igarashi, Kiyohiko" uniqKey="Igarashi K" first="Kiyohiko" last="Igarashi">Kiyohiko Igarashi</name></author><author><name sortKey="Samejima, Masahiro" sort="Samejima, Masahiro" uniqKey="Samejima M" first="Masahiro" last="Samejima">Masahiro Samejima</name></author><author><name sortKey="Held, Benjamin W" sort="Held, Benjamin W" uniqKey="Held B" first="Benjamin W" last="Held">Benjamin W. Held</name></author><author><name sortKey="Barry, Kerrie W" sort="Barry, Kerrie W" uniqKey="Barry K" first="Kerrie W" last="Barry">Kerrie W. Barry</name></author><author><name sortKey="Labutti, Kurt M" sort="Labutti, Kurt M" uniqKey="Labutti K" first="Kurt M" last="Labutti">Kurt M. Labutti</name></author><author><name sortKey="Lapidus, Alla" sort="Lapidus, Alla" uniqKey="Lapidus A" first="Alla" last="Lapidus">Alla Lapidus</name></author><author><name sortKey="Lindquist, Erika A" sort="Lindquist, Erika A" uniqKey="Lindquist E" first="Erika A" last="Lindquist">Erika A. Lindquist</name></author><author><name sortKey="Lucas, Susan M" sort="Lucas, Susan M" uniqKey="Lucas S" first="Susan M" last="Lucas">Susan M. Lucas</name></author><author><name sortKey="Riley, Robert" sort="Riley, Robert" uniqKey="Riley R" first="Robert" last="Riley">Robert Riley</name></author><author><name sortKey="Salamov, Asaf A" sort="Salamov, Asaf A" uniqKey="Salamov A" first="Asaf A" last="Salamov">Asaf A. Salamov</name></author><author><name sortKey="Hoffmeister, Dirk" sort="Hoffmeister, Dirk" uniqKey="Hoffmeister D" first="Dirk" last="Hoffmeister">Dirk Hoffmeister</name></author><author><name sortKey="Schwenk, Daniel" sort="Schwenk, Daniel" uniqKey="Schwenk D" first="Daniel" last="Schwenk">Daniel Schwenk</name></author><author><name sortKey="Hadar, Yitzhak" sort="Hadar, Yitzhak" uniqKey="Hadar Y" first="Yitzhak" last="Hadar">Yitzhak Hadar</name></author><author><name sortKey="Yarden, Oded" sort="Yarden, Oded" uniqKey="Yarden O" first="Oded" last="Yarden">Oded Yarden</name></author><author><name sortKey="De Vries, Ronald P" sort="De Vries, Ronald P" uniqKey="De Vries R" first="Ronald P" last="De Vries">Ronald P. De Vries</name></author><author><name sortKey="Wiebenga, Ad" sort="Wiebenga, Ad" uniqKey="Wiebenga A" first="Ad" last="Wiebenga">Ad Wiebenga</name></author><author><name sortKey="Stenlid, Jan" sort="Stenlid, Jan" uniqKey="Stenlid J" first="Jan" last="Stenlid">Jan Stenlid</name></author><author><name sortKey="Eastwood, Daniel" sort="Eastwood, Daniel" uniqKey="Eastwood D" first="Daniel" last="Eastwood">Daniel Eastwood</name></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name></author><author><name sortKey="Berka, Randy M" sort="Berka, Randy M" uniqKey="Berka R" first="Randy M" last="Berka">Randy M. Berka</name></author><author><name sortKey="Blanchette, Robert A" sort="Blanchette, Robert A" uniqKey="Blanchette R" first="Robert A" last="Blanchette">Robert A. Blanchette</name></author><author><name sortKey="Kersten, Phil" sort="Kersten, Phil" uniqKey="Kersten P" first="Phil" last="Kersten">Phil Kersten</name></author><author><name sortKey="Martinez, Angel T" sort="Martinez, Angel T" uniqKey="Martinez A" first="Angel T" last="Martinez">Angel T. Martinez</name></author><author><name sortKey="Vicuna, Rafael" sort="Vicuna, Rafael" uniqKey="Vicuna R" first="Rafael" last="Vicuna">Rafael Vicuna</name></author><author><name sortKey="Cullen, Dan" sort="Cullen, Dan" uniqKey="Cullen D" first="Dan" last="Cullen">Dan Cullen</name></author></analytic><series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title><idno type="eISSN">1091-6490</idno><imprint><date when="2012" type="published">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (classification)</term><term>Basidiomycota (genetics)</term><term>Genomics (MeSH)</term><term>Hydrolysis (MeSH)</term><term>Lignin (metabolism)</term><term>Molecular Sequence Data (MeSH)</term><term>Oxidation-Reduction (MeSH)</term><term>Phylogeny (MeSH)</term><term>Species Specificity (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Basidiomycota (classification)</term><term>Basidiomycota (génétique)</term><term>Données de séquences moléculaires (MeSH)</term><term>Génomique (MeSH)</term><term>Hydrolyse (MeSH)</term><term>Lignine (métabolisme)</term><term>Oxydoréduction (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Spécificité d'espèce (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Lignin</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Basidiomycota</term><term>Lignine</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genomics</term><term>Hydrolysis</term><term>Molecular Sequence Data</term><term>Oxidation-Reduction</term><term>Phylogeny</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Données de séquences moléculaires</term><term>Génomique</term><term>Hydrolyse</term><term>Oxydoréduction</term><term>Phylogenèse</term><term>Spécificité d'espèce</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Efficient lignin depolymerization is unique to the wood decay basidiomycetes, collectively referred to as white rot fungi. Phanerochaete chrysosporium simultaneously degrades lignin and cellulose, whereas the closely related species, Ceriporiopsis subvermispora, also depolymerizes lignin but may do so with relatively little cellulose degradation. To investigate the basis for selective ligninolysis, we conducted comparative genome analysis of C. subvermispora and P. chrysosporium. Genes encoding manganese peroxidase numbered 13 and five in C. subvermispora and P. chrysosporium, respectively. In addition, the C. subvermispora genome contains at least seven genes predicted to encode laccases, whereas the P. chrysosporium genome contains none. We also observed expansion of the number of C. subvermispora desaturase-encoding genes putatively involved in lipid metabolism. Microarray-based transcriptome analysis showed substantial up-regulation of several desaturase and MnP genes in wood-containing medium. MS identified MnP proteins in C. subvermispora culture filtrates, but none in P. chrysosporium cultures. These results support the importance of MnP and a lignin degradation mechanism whereby cleavage of the dominant nonphenolic structures is mediated by lipid peroxidation products. Two C. subvermispora genes were predicted to encode peroxidases structurally similar to P. chrysosporium lignin peroxidase and, following heterologous expression in Escherichia coli, the enzymes were shown to oxidize high redox potential substrates, but not Mn(2+). Apart from oxidative lignin degradation, we also examined cellulolytic and hemicellulolytic systems in both fungi. In summary, the C. subvermispora genetic inventory and expression patterns exhibit increased oxidoreductase potential and diminished cellulolytic capability relative to P. chrysosporium.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22434909</PMID><DateCompleted><Year>2012</Year><Month>05</Month><Day>21</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1091-6490</ISSN><JournalIssue CitedMedium="Internet"><Volume>109</Volume><Issue>14</Issue><PubDate><Year>2012</Year><Month>Apr</Month><Day>03</Day></PubDate></JournalIssue><Title>Proceedings of the National Academy of Sciences of the United States of America</Title><ISOAbbreviation>Proc Natl Acad Sci U S A</ISOAbbreviation></Journal><ArticleTitle>Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.</ArticleTitle><Pagination><MedlinePgn>5458-63</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1073/pnas.1119912109</ELocationID><Abstract><AbstractText>Efficient lignin depolymerization is unique to the wood decay basidiomycetes, collectively referred to as white rot fungi. Phanerochaete chrysosporium simultaneously degrades lignin and cellulose, whereas the closely related species, Ceriporiopsis subvermispora, also depolymerizes lignin but may do so with relatively little cellulose degradation. To investigate the basis for selective ligninolysis, we conducted comparative genome analysis of C. subvermispora and P. chrysosporium. Genes encoding manganese peroxidase numbered 13 and five in C. subvermispora and P. chrysosporium, respectively. In addition, the C. subvermispora genome contains at least seven genes predicted to encode laccases, whereas the P. chrysosporium genome contains none. We also observed expansion of the number of C. subvermispora desaturase-encoding genes putatively involved in lipid metabolism. Microarray-based transcriptome analysis showed substantial up-regulation of several desaturase and MnP genes in wood-containing medium. MS identified MnP proteins in C. subvermispora culture filtrates, but none in P. chrysosporium cultures. These results support the importance of MnP and a lignin degradation mechanism whereby cleavage of the dominant nonphenolic structures is mediated by lipid peroxidation products. Two C. subvermispora genes were predicted to encode peroxidases structurally similar to P. chrysosporium lignin peroxidase and, following heterologous expression in Escherichia coli, the enzymes were shown to oxidize high redox potential substrates, but not Mn(2+). Apart from oxidative lignin degradation, we also examined cellulolytic and hemicellulolytic systems in both fungi. In summary, the C. subvermispora genetic inventory and expression patterns exhibit increased oxidoreductase potential and diminished cellulolytic capability relative to P. chrysosporium.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Fernandez-Fueyo</LastName><ForeName>Elena</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Cientificas, E-28040 Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ruiz-Dueñas</LastName><ForeName>Francisco J</ForeName><Initials>FJ</Initials></Author><Author ValidYN="Y"><LastName>Ferreira</LastName><ForeName>Patricia</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Floudas</LastName><ForeName>Dimitrios</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Hibbett</LastName><ForeName>David S</ForeName><Initials>DS</Initials></Author><Author ValidYN="Y"><LastName>Canessa</LastName><ForeName>Paulo</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Larrondo</LastName><ForeName>Luis F</ForeName><Initials>LF</Initials></Author><Author ValidYN="Y"><LastName>James</LastName><ForeName>Tim Y</ForeName><Initials>TY</Initials></Author><Author ValidYN="Y"><LastName>Seelenfreund</LastName><ForeName>Daniela</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Lobos</LastName><ForeName>Sergio</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Polanco</LastName><ForeName>Rubén</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Tello</LastName><ForeName>Mario</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Honda</LastName><ForeName>Yoichi</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Watanabe</LastName><ForeName>Takahito</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Watanabe</LastName><ForeName>Takashi</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Ryu</LastName><ForeName>Jae San</ForeName><Initials>JS</Initials></Author><Author ValidYN="N"><LastName>San</LastName><ForeName>Ryu Jae</ForeName><Initials>RJ</Initials></Author><Author ValidYN="Y"><LastName>Kubicek</LastName><ForeName>Christian P</ForeName><Initials>CP</Initials></Author><Author ValidYN="Y"><LastName>Schmoll</LastName><ForeName>Monika</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Gaskell</LastName><ForeName>Jill</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Hammel</LastName><ForeName>Kenneth E</ForeName><Initials>KE</Initials></Author><Author ValidYN="Y"><LastName>St John</LastName><ForeName>Franz J</ForeName><Initials>FJ</Initials></Author><Author ValidYN="Y"><LastName>Vanden Wymelenberg</LastName><ForeName>Amber</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Sabat</LastName><ForeName>Grzegorz</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Splinter BonDurant</LastName><ForeName>Sandra</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Syed</LastName><ForeName>Khajamohiddin</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Yadav</LastName><ForeName>Jagjit S</ForeName><Initials>JS</Initials></Author><Author ValidYN="Y"><LastName>Doddapaneni</LastName><ForeName>Harshavardhan</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Subramanian</LastName><ForeName>Venkataramanan</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Lavín</LastName><ForeName>José L</ForeName><Initials>JL</Initials></Author><Author ValidYN="Y"><LastName>Oguiza</LastName><ForeName>José A</ForeName><Initials>JA</Initials></Author><Author ValidYN="Y"><LastName>Perez</LastName><ForeName>Gumer</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Pisabarro</LastName><ForeName>Antonio G</ForeName><Initials>AG</Initials></Author><Author ValidYN="Y"><LastName>Ramirez</LastName><ForeName>Lucia</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Santoyo</LastName><ForeName>Francisco</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Master</LastName><ForeName>Emma</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Coutinho</LastName><ForeName>Pedro M</ForeName><Initials>PM</Initials></Author><Author ValidYN="Y"><LastName>Henrissat</LastName><ForeName>Bernard</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Lombard</LastName><ForeName>Vincent</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Magnuson</LastName><ForeName>Jon Karl</ForeName><Initials>JK</Initials></Author><Author ValidYN="Y"><LastName>Kües</LastName><ForeName>Ursula</ForeName><Initials>U</Initials></Author><Author ValidYN="Y"><LastName>Hori</LastName><ForeName>Chiaki</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Igarashi</LastName><ForeName>Kiyohiko</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Samejima</LastName><ForeName>Masahiro</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Held</LastName><ForeName>Benjamin W</ForeName><Initials>BW</Initials></Author><Author ValidYN="Y"><LastName>Barry</LastName><ForeName>Kerrie W</ForeName><Initials>KW</Initials></Author><Author ValidYN="Y"><LastName>LaButti</LastName><ForeName>Kurt M</ForeName><Initials>KM</Initials></Author><Author ValidYN="Y"><LastName>Lapidus</LastName><ForeName>Alla</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Lindquist</LastName><ForeName>Erika A</ForeName><Initials>EA</Initials></Author><Author ValidYN="Y"><LastName>Lucas</LastName><ForeName>Susan M</ForeName><Initials>SM</Initials></Author><Author ValidYN="Y"><LastName>Riley</LastName><ForeName>Robert</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Salamov</LastName><ForeName>Asaf A</ForeName><Initials>AA</Initials></Author><Author ValidYN="Y"><LastName>Hoffmeister</LastName><ForeName>Dirk</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Schwenk</LastName><ForeName>Daniel</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Hadar</LastName><ForeName>Yitzhak</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Yarden</LastName><ForeName>Oded</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>de Vries</LastName><ForeName>Ronald P</ForeName><Initials>RP</Initials></Author><Author ValidYN="Y"><LastName>Wiebenga</LastName><ForeName>Ad</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Stenlid</LastName><ForeName>Jan</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Eastwood</LastName><ForeName>Daniel</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Grigoriev</LastName><ForeName>Igor V</ForeName><Initials>IV</Initials></Author><Author ValidYN="Y"><LastName>Berka</LastName><ForeName>Randy M</ForeName><Initials>RM</Initials></Author><Author ValidYN="Y"><LastName>Blanchette</LastName><ForeName>Robert A</ForeName><Initials>RA</Initials></Author><Author ValidYN="Y"><LastName>Kersten</LastName><ForeName>Phil</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Martinez</LastName><ForeName>Angel T</ForeName><Initials>AT</Initials></Author><Author ValidYN="Y"><LastName>Vicuna</LastName><ForeName>Rafael</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Cullen</LastName><ForeName>Dan</ForeName><Initials>D</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>AEOV00000000</AccessionNumber></AccessionNumberList></DataBank><DataBank><DataBankName>GEO</DataBankName><AccessionNumberList><AccessionNumber>GSE34636</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2012</Year><Month>03</Month><Day>20</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Proc Natl Acad Sci U S A</MedlineTA><NlmUniqueID>7505876</NlmUniqueID><ISSNLinking>0027-8424</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>9005-53-2</RegistryNumber><NameOfSubstance UI="D008031">Lignin</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="ErratumIn"><RefSource>Proc Natl Acad Sci U S A. 2012 May 22;109(21):8352</RefSource><Note>San, Ryu Jae [corrected to Ryu, Jae San]</Note></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="Y">Genomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006868" MajorTopicYN="N">Hydrolysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008031" MajorTopicYN="N">Lignin</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010084" MajorTopicYN="N">Oxidation-Reduction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2012</Year><Month>3</Month><Day>22</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2012</Year><Month>3</Month><Day>22</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2012</Year><Month>5</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">22434909</ArticleId><ArticleId IdType="pii">1119912109</ArticleId><ArticleId IdType="doi">10.1073/pnas.1119912109</ArticleId><ArticleId IdType="pmc">PMC3325662</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Appl Environ Microbiol. 2008 May;74(9):2873-81</Citation><ArticleIdList><ArticleId IdType="pubmed">18326680</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2009 Feb;75(4):1156-64</Citation><ArticleIdList><ArticleId IdType="pubmed">19088315</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2004 Jun;22(6):695-700</Citation><ArticleIdList><ArticleId IdType="pubmed">15122302</ArticleId></ArticleIdList></Reference><Reference><Citation>C R Biol. 2011 Nov;334(11):795-805</Citation><ArticleIdList><ArticleId IdType="pubmed">22078736</ArticleId></ArticleIdList></Reference><Reference><Citation>Biotechnol Bioeng. 2003 Aug 20;83(4):386-94</Citation><ArticleIdList><ArticleId IdType="pubmed">12800133</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Microbiol Biotechnol. 2010 Jun;87(1):215-24</Citation><ArticleIdList><ArticleId IdType="pubmed">20155356</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Protoc. 2009;4(1):1-13</Citation><ArticleIdList><ArticleId IdType="pubmed">19131951</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Genet Biol. 2006 May;43(5):343-56</Citation><ArticleIdList><ArticleId IdType="pubmed">16524749</ArticleId></ArticleIdList></Reference><Reference><Citation>Biochim Biophys Acta. 1998 Nov 26;1443(1-2):65-74</Citation><ArticleIdList><ArticleId IdType="pubmed">9838047</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Biochem Biophys. 1984 Nov 1;234(2):353-62</Citation><ArticleIdList><ArticleId IdType="pubmed">6497376</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Plant Biol. 2008 Jun;11(3):349-55</Citation><ArticleIdList><ArticleId IdType="pubmed">18359268</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2010 Jun;76(11):3599-610</Citation><ArticleIdList><ArticleId IdType="pubmed">20400566</ArticleId></ArticleIdList></Reference><Reference><Citation>FEBS Lett. 1995 Sep 4;371(2):132-6</Citation><ArticleIdList><ArticleId IdType="pubmed">7672112</ArticleId></ArticleIdList></Reference><Reference><Citation>Biochem J. 1996 Apr 1;315 ( Pt 1):15-9</Citation><ArticleIdList><ArticleId IdType="pubmed">8670100</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiology. 2003 May;149(Pt 5):1177-82</Citation><ArticleIdList><ArticleId IdType="pubmed">12724379</ArticleId></ArticleIdList></Reference><Reference><Citation>FEBS J. 2006 May;273(10):2308-26</Citation><ArticleIdList><ArticleId IdType="pubmed">16650005</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2011 Jul;77(13):4499-507</Citation><ArticleIdList><ArticleId IdType="pubmed">21551287</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 1996 Oct;62(10):3679-86</Citation><ArticleIdList><ArticleId IdType="pubmed">16535418</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Rev. 2008 May;32(3):501-21</Citation><ArticleIdList><ArticleId IdType="pubmed">18371173</ArticleId></ArticleIdList></Reference><Reference><Citation>Biochim Biophys Acta. 1999 Oct 12;1434(2):356-64</Citation><ArticleIdList><ArticleId IdType="pubmed">10525153</ArticleId></ArticleIdList></Reference><Reference><Citation>Fungal Genet Biol. 2007 Feb;44(2):77-87</Citation><ArticleIdList><ArticleId IdType="pubmed">16971147</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Lett. 2001 May 15;199(1):91-6</Citation><ArticleIdList><ArticleId IdType="pubmed">11356573</ArticleId></ArticleIdList></Reference><Reference><Citation>Syst Biol. 2008 Oct;57(5):758-71</Citation><ArticleIdList><ArticleId IdType="pubmed">18853362</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2005 Apr;71(4):1775-84</Citation><ArticleIdList><ArticleId IdType="pubmed">15812000</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 1996 Jul;62(7):2660-3</Citation><ArticleIdList><ArticleId IdType="pubmed">8779605</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2009;60(2):441-52</Citation><ArticleIdList><ArticleId IdType="pubmed">18987391</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Espagne</li></country><region><li>Communauté de Madrid</li></region></list><tree><noCountry><name sortKey="Barry, Kerrie W" sort="Barry, Kerrie W" uniqKey="Barry K" first="Kerrie W" last="Barry">Kerrie W. Barry</name><name sortKey="Berka, Randy M" sort="Berka, Randy M" uniqKey="Berka R" first="Randy M" last="Berka">Randy M. Berka</name><name sortKey="Blanchette, Robert A" sort="Blanchette, Robert A" uniqKey="Blanchette R" first="Robert A" last="Blanchette">Robert A. Blanchette</name><name sortKey="Canessa, Paulo" sort="Canessa, Paulo" uniqKey="Canessa P" first="Paulo" last="Canessa">Paulo Canessa</name><name sortKey="Coutinho, Pedro M" sort="Coutinho, Pedro M" uniqKey="Coutinho P" first="Pedro M" last="Coutinho">Pedro M. Coutinho</name><name sortKey="Cullen, Dan" sort="Cullen, Dan" uniqKey="Cullen D" first="Dan" last="Cullen">Dan Cullen</name><name sortKey="De Vries, Ronald P" sort="De Vries, Ronald P" uniqKey="De Vries R" first="Ronald P" last="De Vries">Ronald P. De Vries</name><name sortKey="Doddapaneni, Harshavardhan" sort="Doddapaneni, Harshavardhan" uniqKey="Doddapaneni H" first="Harshavardhan" last="Doddapaneni">Harshavardhan Doddapaneni</name><name sortKey="Eastwood, Daniel" sort="Eastwood, Daniel" uniqKey="Eastwood D" first="Daniel" last="Eastwood">Daniel Eastwood</name><name sortKey="Ferreira, Patricia" sort="Ferreira, Patricia" uniqKey="Ferreira P" first="Patricia" last="Ferreira">Patricia Ferreira</name><name sortKey="Floudas, Dimitrios" sort="Floudas, Dimitrios" uniqKey="Floudas D" first="Dimitrios" last="Floudas">Dimitrios Floudas</name><name sortKey="Gaskell, Jill" sort="Gaskell, Jill" uniqKey="Gaskell J" first="Jill" last="Gaskell">Jill Gaskell</name><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><name sortKey="Hadar, Yitzhak" sort="Hadar, Yitzhak" uniqKey="Hadar Y" first="Yitzhak" last="Hadar">Yitzhak Hadar</name><name sortKey="Hammel, Kenneth E" sort="Hammel, Kenneth E" uniqKey="Hammel K" first="Kenneth E" last="Hammel">Kenneth E. Hammel</name><name sortKey="Held, Benjamin W" sort="Held, Benjamin W" uniqKey="Held B" first="Benjamin W" last="Held">Benjamin W. Held</name><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><name sortKey="Hibbett, David S" sort="Hibbett, David S" uniqKey="Hibbett D" first="David S" last="Hibbett">David S. Hibbett</name><name sortKey="Hoffmeister, Dirk" sort="Hoffmeister, Dirk" uniqKey="Hoffmeister D" first="Dirk" last="Hoffmeister">Dirk Hoffmeister</name><name sortKey="Honda, Yoichi" sort="Honda, Yoichi" uniqKey="Honda Y" first="Yoichi" last="Honda">Yoichi Honda</name><name sortKey="Hori, Chiaki" sort="Hori, Chiaki" uniqKey="Hori C" first="Chiaki" last="Hori">Chiaki Hori</name><name sortKey="Igarashi, Kiyohiko" sort="Igarashi, Kiyohiko" uniqKey="Igarashi K" first="Kiyohiko" last="Igarashi">Kiyohiko Igarashi</name><name sortKey="James, Tim Y" sort="James, Tim Y" uniqKey="James T" first="Tim Y" last="James">Tim Y. James</name><name sortKey="Kersten, Phil" sort="Kersten, Phil" uniqKey="Kersten P" first="Phil" last="Kersten">Phil Kersten</name><name sortKey="Kubicek, Christian P" sort="Kubicek, Christian P" uniqKey="Kubicek C" first="Christian P" last="Kubicek">Christian P. 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Lindquist</name><name sortKey="Lobos, Sergio" sort="Lobos, Sergio" uniqKey="Lobos S" first="Sergio" last="Lobos">Sergio Lobos</name><name sortKey="Lombard, Vincent" sort="Lombard, Vincent" uniqKey="Lombard V" first="Vincent" last="Lombard">Vincent Lombard</name><name sortKey="Lucas, Susan M" sort="Lucas, Susan M" uniqKey="Lucas S" first="Susan M" last="Lucas">Susan M. Lucas</name><name sortKey="Magnuson, Jon Karl" sort="Magnuson, Jon Karl" uniqKey="Magnuson J" first="Jon Karl" last="Magnuson">Jon Karl Magnuson</name><name sortKey="Martinez, Angel T" sort="Martinez, Angel T" uniqKey="Martinez A" first="Angel T" last="Martinez">Angel T. Martinez</name><name sortKey="Master, Emma" sort="Master, Emma" uniqKey="Master E" first="Emma" last="Master">Emma Master</name><name sortKey="Oguiza, Jose A" sort="Oguiza, Jose A" uniqKey="Oguiza J" first="José A" last="Oguiza">José A. Oguiza</name><name sortKey="Perez, Gumer" sort="Perez, Gumer" uniqKey="Perez G" first="Gumer" last="Perez">Gumer Perez</name><name sortKey="Pisabarro, Antonio G" sort="Pisabarro, Antonio G" uniqKey="Pisabarro A" first="Antonio G" last="Pisabarro">Antonio G. Pisabarro</name><name sortKey="Polanco, Ruben" sort="Polanco, Ruben" uniqKey="Polanco R" first="Rubén" last="Polanco">Rubén Polanco</name><name sortKey="Ramirez, Lucia" sort="Ramirez, Lucia" uniqKey="Ramirez L" first="Lucia" last="Ramirez">Lucia Ramirez</name><name sortKey="Riley, Robert" sort="Riley, Robert" uniqKey="Riley R" first="Robert" last="Riley">Robert Riley</name><name sortKey="Ruiz Due As, Francisco J" sort="Ruiz Due As, Francisco J" uniqKey="Ruiz Due As F" first="Francisco J" last="Ruiz-Due As">Francisco J. Ruiz-Due As</name><name sortKey="Ryu, Jae San" sort="Ryu, Jae San" uniqKey="Ryu J" first="Jae San" last="Ryu">Jae San Ryu</name><name sortKey="Sabat, Grzegorz" sort="Sabat, Grzegorz" uniqKey="Sabat G" first="Grzegorz" last="Sabat">Grzegorz Sabat</name><name sortKey="Salamov, Asaf A" sort="Salamov, Asaf A" uniqKey="Salamov A" first="Asaf A" last="Salamov">Asaf A. Salamov</name><name sortKey="Samejima, Masahiro" sort="Samejima, Masahiro" uniqKey="Samejima M" first="Masahiro" last="Samejima">Masahiro Samejima</name><name sortKey="San, Ryu Jae" sort="San, Ryu Jae" uniqKey="San R" first="Ryu Jae" last="San">Ryu Jae San</name><name sortKey="Santoyo, Francisco" sort="Santoyo, Francisco" uniqKey="Santoyo F" first="Francisco" last="Santoyo">Francisco Santoyo</name><name sortKey="Schmoll, Monika" sort="Schmoll, Monika" uniqKey="Schmoll M" first="Monika" last="Schmoll">Monika Schmoll</name><name sortKey="Schwenk, Daniel" sort="Schwenk, Daniel" uniqKey="Schwenk D" first="Daniel" last="Schwenk">Daniel Schwenk</name><name sortKey="Seelenfreund, Daniela" sort="Seelenfreund, Daniela" uniqKey="Seelenfreund D" first="Daniela" last="Seelenfreund">Daniela Seelenfreund</name><name sortKey="Splinter Bondurant, Sandra" sort="Splinter Bondurant, Sandra" uniqKey="Splinter Bondurant S" first="Sandra" last="Splinter Bondurant">Sandra Splinter Bondurant</name><name sortKey="St John, Franz J" sort="St John, Franz J" uniqKey="St John F" first="Franz J" last="St John">Franz J. St John</name><name sortKey="Stenlid, Jan" sort="Stenlid, Jan" uniqKey="Stenlid J" first="Jan" last="Stenlid">Jan Stenlid</name><name sortKey="Subramanian, Venkataramanan" sort="Subramanian, Venkataramanan" uniqKey="Subramanian V" first="Venkataramanan" last="Subramanian">Venkataramanan Subramanian</name><name sortKey="Syed, Khajamohiddin" sort="Syed, Khajamohiddin" uniqKey="Syed K" first="Khajamohiddin" last="Syed">Khajamohiddin Syed</name><name sortKey="Tello, Mario" sort="Tello, Mario" uniqKey="Tello M" first="Mario" last="Tello">Mario Tello</name><name sortKey="Vanden Wymelenberg, Amber" sort="Vanden Wymelenberg, Amber" uniqKey="Vanden Wymelenberg A" first="Amber" last="Vanden Wymelenberg">Amber Vanden Wymelenberg</name><name sortKey="Vicuna, Rafael" sort="Vicuna, Rafael" uniqKey="Vicuna R" first="Rafael" last="Vicuna">Rafael Vicuna</name><name sortKey="Watanabe, Takahito" sort="Watanabe, Takahito" uniqKey="Watanabe T" first="Takahito" last="Watanabe">Takahito Watanabe</name><name sortKey="Watanabe, Takashi" sort="Watanabe, Takashi" uniqKey="Watanabe T" first="Takashi" last="Watanabe">Takashi Watanabe</name><name sortKey="Wiebenga, Ad" sort="Wiebenga, Ad" uniqKey="Wiebenga A" first="Ad" last="Wiebenga">Ad Wiebenga</name><name sortKey="Yadav, Jagjit S" sort="Yadav, Jagjit S" uniqKey="Yadav J" first="Jagjit S" last="Yadav">Jagjit S. Yadav</name><name sortKey="Yarden, Oded" sort="Yarden, Oded" uniqKey="Yarden O" first="Oded" last="Yarden">Oded Yarden</name></noCountry><country name="Espagne"><region name="Communauté de Madrid"><name sortKey="Fernandez Fueyo, Elena" sort="Fernandez Fueyo, Elena" uniqKey="Fernandez Fueyo E" first="Elena" last="Fernandez-Fueyo">Elena Fernandez-Fueyo</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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